Descriptive Genomic Analysis and Sequence Genotyping of the Two Papaya Species (Vasconcellea pubescens and Vasconcellea chilensis) Using GBS Tools.

A genotyping by sequencing (GBS) approach was used to analyze the organization of genetic diversity in V. pubescens and V. chilensis. GBS identified 4675 and 4451 SNPs/INDELs in two papaya species. The cultivated orchards of V. pubescens exhibited scarce genetic diversity and low but significant genetic differentiation. The neutrality test yielded a negative and significant result, suggesting that V. pubescens suffered a selective sweep or a rapid expansion after a bottleneck during domestication. In contrast, V. chilensis exhibited a high level of genetic diversity. The genetic differentiation among the populations was slight, but it was possible to distinguish the two genetic groups. The neutrality test indicated no evidence that natural selection and genetic drift affect the natural population of V. chilensis. Using the Carica papaya genome as a reference, we identified critical SNPs/INDELs associated with putative genes. Most of the identified genes are related to stress responses (salt and nematode) and vegetative and reproductive development. These results will be helpful for future breeding and conservation programs of the Caricaceae family.

Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae).

BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus.

Regeneration of highland papaya (Vasconcellea pubescens) from anther culture.

PREMISE OF THE STUDY: Vasconcellea pubescens is an important Caricaceae species cultivated in several countries of South America. The objective of this study was to investigate different media compositions and plant growth regulators to induce plant regeneration. METHODS: Anthers were cultured in Murashige and Skoog medium with varying concentrations of naphthalene acetic acid (NAA) and 2,4-dichlorophenoxyacetic acid (2,4-D) plus a cytokinin (N-(2-chloro-4-pyridyl)-N'-phenylurea). The effect of the basal medium supplemented with auxins and cytokinins on shoot regeneration from the induced calli was also evaluated. Addition of maltose to the basal medium was also tested. RESULTS: The combination of 0.54 µM NAA and 22.66 µM 2,4-D induced the highest rate of calli formation. Regeneration via organogenesis was obtained in Murashige and Skoog and Woody Plant Medium supplemented with maltose and containing 8.88 µM 6-benzylaminopurine, 5.71 µM indoleacetic acid, and 2.28 µM zeatin. DISCUSSION: The plant regeneration protocol reported here permits the development of haploid and double haploid plants that can be useful for propagation purposes, allow a better molecular understanding of the species, and facilitate the production of new cultivars.

Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)

BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus.

Respuesta de cultivares de Musa spp. al estrés hídrico in vitro inducido con polietilenglicol 6000 / Responses of Musa spp. cultivars to in vitro water stress induced with polyethylene glycol 6000

RESUMEN Los plátanos y bananos son cultivos sensibles al déficit hídrico. Las sequías cada vez más prolongadas sugieren la necesidad de obtener plantas tolerantes a este factor; la selección temprana de estas plantas, comparada con la selección en campo, permite ahorrar tiempo y trabajar con mayores volúmenes de individuos. Para ello es conveniente contar con cultivares patrones cuya respuesta al déficit hídrico in vitro sea favorable. El objetivo del presente trabajo fue determinar la respuesta de cultivares de Musa spp. con diferente composición genómica al estrés hídrico inducido in vitro con polietilenglicol 6000 (PEG-6000). Se estudiaron los cultivares 'Pelipita' (ABB), 'Manzano' (AAB) y 'Grande naine' (AAA). El estrés se indujo con 30 g/L de PEG-6000 en medio de cultivo semisólido de multiplicación. A los 30 días se evaluaron variables indicadoras de estrés morfológicas (altura y número de brotes por explante), fisiológicas (masa fresca y masa seca) y bioquímicas (contenido prolina, peróxido de hidrógeno y malondialdehido). En el cultivar 'Pelipita' se afectó solamente la altura de las plantas, mientras que en los demás se afectaron todas las variables excepto la masa seca en el 'Manzano'. En este último y en el 'Grande naine' se incrementó la prolina, el peróxido de hidrógeno y el malondialdehido, lo que evidenció un mayor estrés oxidativo y daño en las membranas celulares. Los cultivares estudiados, pudieran emplearse como controles de tolerancia ('Pelipita') y sensibilidad ('Grande naine' y 'Manzano') en la selección in vitro de plantas tolerantes a la sequía, en futuros programas de mejoramiento genético.

ABSTRACT Bananas and plantains are crops very sensitive to water deficit. Increasingly prolonged drought condition suggests the need for tolerant plants to this factor. The early selection of these plants in in vitro conditions save time and allow working with large volumes of individuals. This requires having genotypes with favorable response to in vitro water deficit. The aim of this work was to determine the response of Musa spp. cultivars, with different genotype contribution, to in vitro water stress induced by polyethylene glycol 6000 (PEG-6000). Cultivars 'Pelipita' (ABB), 'Manzano' (AAB) and 'Grande naine' (AAA) were cultured in semisolid multiplication medium supplemented with PEG-6000 30 g/L. Different stress indicator traits were evaluated after 30 days (morphological: height and number of shoots per explant; physiological: fresh and dry weight; and biochemical: proline, hydrogen peroxide and malondialdehyde content). As results, osmotic stress affected only plant height in 'Pelipita' cultivar. However, in the other cultivars all variables were affected, except dry weight in 'Manzano'. Moreover cv. 'Grande naine' and 'Manzano' increased proline, hydrogen peroxide and malondialdehyde content. These results indicate that osmotic pressure could induce oxidative stress and cell membrane damages in these cultivars. The obtained results suggested that these genotypes could be used as a tolerant ('Pelipita') and sensitive ('Grande naine' and 'Manzano') controls in in vitro selection of drought-tolerant plants in future breeding programs.

Biotechnological Approaches for Biomass and Cardenolide Production in Digitalis purpurea L.

Digitalis purpurea L. is one of the main economically viable sources of cardenolides (cardiac glycosides) for the pharmaceutical industry. Nevertheless, production of cardenolides in plants grown by traditional agriculture is not always an efficient process and can be affected by biotic and abiotic factors. This chapter provides two biotechnology strategies for biomass and cardenolide production in D. purpurea. Firstly, we report biomass production using a temporary immersion system (TIS), combined with cardenolide extraction and quantification. Secondly, an efficient protocol for genetic transformation via Agrobacterium tumefaciens is provided. These strategies can be used independently or combined in order to increase the content of cardiac glycosides in D. purpurea and to unravel biosynthetic pathways associated to cardiac glycoside production.

Excision of a selectable marker gene in transgenic banana using a Cre/lox system controlled by an embryo specific promoter.

Antibiotic and herbicide resistance genes have been used in transgene technology as powerful selection tools. Nonetheless, once transgenic events have been obtained their presence is no longer needed and can even be undesirable. In this work, we have developed a system to excise the selectable marker and the cre recombinase genes from transgenic banana cv. 'Grande Naine' (Musa AAA). To achieve this, the embryo specific REG-2 promoter was isolated from rice and its expression pattern in banana cell clumps, somatic embryos and regenerated plantlets was characterized by using a pREG2::uidA fusion construct. Subsequently, the REG-2 promoter was placed upstream of the cre gene, conferring Cre functionality in somatic embryos and recombination of lox sites resulting in excision of the selectable marker and cre genes. PCR analysis revealed that 41.7 % of the analysed transgenic plants were completely marker free, results that were thereafter confirmed by Southern blot hybridization. These results demonstrate the feasibility of using developmentally controlled promoters to mediate marker excision in banana. This system does not require any extra handling compared to the conventional transformation procedure and might be useful in other species regenerating through somatic embryogenesis.

Heat shock induced excision of selectable marker genes in transgenic banana by the Cre-lox site-specific recombination system.

Selectable marker genes are indispensable for efficient production of transgenic events, but are no longer needed after the selection process and may cause public concern and technological problems. Although several gene excision systems exist, few have been optimized for vegetatively propagated crops. Using a Cre-loxP auto-excision strategy, we obtained transgenic banana plants cv. Grande Naine (Musa AAA) devoid of the marker gene used for selection. We used T-DNA vectors with the cre recombinase gene under control of a heat shock promoter and selectable marker gene cassettes placed between two loxP sites in direct orientation, and a gene of interest inserted outside of the loxP sites. Heat shock promoters pGmHSP17.6-L and pHSP18.2, from soybean and Arabidopsis respectively, were tested. A transient heat shock treatment of primary transgenic embryos was sufficient for inducing cre and excising cre and the marker genes. Excision efficiency, as determined by PCR and Southern hybridization was 59.7 and 40.0% for the GmHSP17.6-L and HSP18.2 promoters, respectively. Spontaneous excision was not observed in 50 plants derived from untreated transgenic embryos. To our knowledge this is the first report describing an efficient marker gene removal system for banana. The method described is simple and might be generally applicable for the production of marker-free transgenic plants of many crop species.

Nuevo método para la selección rapida de plantas de banano (Musa spp. AAA cv. Grande naine) transformadas con gen bar procedentes de campo, empleando glufosinato de amonio / New method for rapid selection of banana (Musa spp. AAA cv. Grande naine) plants with bar gene in the field using ammonium gluphosinate

Los genes marcadores de la selección son ampliamente utilizados para la transformación eficiente de diferentes cultivos, sin embargo, existen muy pocas referencias sobre el desarrollo de métodos de selección temprana en campo de plantas supuestamente transformadas con marcador de selección tipo herbicidas. La presente investigación tuvo como objetivo evaluar el efecto del glufosinato de amonio a partir del herbicida Finale en los fragmentos de hojas de plantas de campo cultivados in vitro, para la selección de líneas transformadas de banano cv. Grande naine (Musa spp. AAA), con una construcción que porta como marcador de selección el gen bar. A partir del método desarrollado con el empleo de fragmentos de hojas de plantas procedentes de campo, cultivados in vitro en el medio de cultivo agar al 1% más agua y 30,0 g/l-1 de glufosinato de amonio se logró diferenciar las dos líneas transformadas del control no transformado, a partir de la expresión del gen bar. Ambas líneas fueron positivas en el análisis molecular de PCR. Estos resultados permiten disponer de una herramienta útil y simple como parte de un protocolo de transformación genética para el cultivo del banano, siendo el primer informe de este resultado a nivel internacional.

Selector marker genes are widely used for the efficient transformation of different crops; however, there are very few references on the development of early selection methods in the fields of potentially transformed plants for herbicides. The objective of this research was to evaluate the effect of ammonium gluphosinate from the herbicide Finale in leaf fragments from in vitro plants grown in the fields for the selection of putative transformed lines of banana cv. Grande naine (Musa spp. AAA), with a construction that has the bar gene as the selector marker gene. Since the method developed with the use of leaf fragments from field plants culture in vitro in the agar at 1% more water and 30.0 gl-1 ammonium gluphosinate did differentiate the two transformed lines untransformed control, from the bar gene expression. Both lines were positive in the PCR molecular analysis. These results were a useful tool and form a part of a protocol of genetic transformation for banana, being the first reported result.